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Clinical Data Analyst

Analyze clinical trial reports, datasets, and competitive intelligence documents

5 min readPublished: 2025-01-15
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Tech Stack:

Claude Sonnet 4Next.js 14TypeScriptVision APIPDF-parseXLSX
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Overview

AI-powered analyst for clinical trials, efficacy data, and competitive intelligence. Upload PDFs, Excel files, images, or URLs to get instant analysis with automatic citations. Built with Claude Sonnet 4 featuring vision capabilities for analyzing charts and figures.

Data Sources: 🧬 Gosset.ai Pharmaceutical Intelligence • 🔬 ClinicalTrials.gov • 📚 PubMed E-utilities

Gosset.ai Integration: Access Phase Transition Rates (PTRs) and trial benchmarks across 100K+ drug assets via live MCP connection. Provides evidence-based success predictions with hybrid live/simulated mode.


Key Features

📊

Clinical Trial Analysis

Extract efficacy endpoints (ORR, PFS, OS), p-values, confidence intervals, and safety signals from Phase 1-3 trial reports. Vision AI reads charts and statistical tables automatically.

🧬

Pharmaceutical Intelligence

Gosset.ai integration provides Phase Transition Rates, trial success predictions, and design benchmarks (sample sizes, endpoints, durations) across indications and modalities.

🔍

Competitive Intelligence

Compare competitor trials, analyze ClinicalTrials.gov entries, extract insights from press releases and conference presentations. Multi-document synthesis across sources.

📄

Multi-Format Processing

Handles PDFs, Excel/CSV, images (PNG/JPG), and URLs. Upload up to 5 files (10MB max) simultaneously. All insights include automatic source citations.

📚

Literature Search

Direct PubMed access to 35M+ biomedical publications. Search by indication, drug, biomarker, or endpoint. Retrieve abstracts, citations, and study metadata in real-time.

📝

Citation Tracking

Every insight references its source document with inline citations [Source: filename.pdf]. Track document history with timestamps for audit trails and compliance.


🤖 NEW: Sonny Multi-Agent Collaboration System

Now available: Combine the Clinical Data Analyst with Patent Expert and Financial Analyst for comprehensive biotech deal analysis.

Perfect for:

  • M&A Due Diligence - Clinical data + IP analysis + financial modeling
  • Investment Decisions - Integrated risk assessment across all dimensions
  • Competitive Intelligence - Clinical benchmarking + patent landscape + market sizing
  • Licensing Deals - Technology assessment + IP strength + deal structuring

Coordinated by Sonny, the agents work together, asking each other questions and building on insights to provide strategic recommendations.

✨ Try Sonny Multi-Agent Collaboration

Experience how Sonny orchestrates specialized AI agents to analyze complex scenarios.

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Example Questions

Efficacy Analysis:

  • "What's the Phase 2→3 success rate for Alzheimer's Disease? Use Gosset.ai to estimate trial probability."
  • "Compare CAR-T therapy PTRs by indication. What are melanoma vs lymphoma success rates?"

Safety & Competitive Intelligence:

  • "Identify all Grade 3+ adverse events and compare to competitor X's Phase 2 safety profile."
  • "Benchmark our Phase 2 trial design: What sample sizes and endpoints are typical for MS trials?"

Ask the agent for a comprehensive list of analysis types, query templates, and advanced capabilities.


Future Enhancements

Live Now

  • Citation Tracking - Every insight references its source document
  • Sonny Multi-Agent Collaboration - Combine Clinical + Patent + Financial analysts for comprehensive deal analysis (Try it now)

Coming Soon

  • 📊 Data Visualization Export - Auto-generate charts from analysis
  • 📁 Batch Processing - Compare up to 4 trials simultaneously with structured comparison tables
  • 💾 Structured Data Export - Download findings as CSV/JSON for further analysis
  • 📈 Export to BI Tools - Direct integration with Tableau and Power BI

Roadmap

  • 🔍 Historical Benchmarking - Compare results to database of approved therapies
  • 🔐 Audit Trail - Complete logging of queries and responses for regulatory compliance
  • 📋 Report Templates - Pre-configured analysis formats for common use cases

Technical Details

Click to expand technical implementation details

AI Model

  • Claude Sonnet 4 (claude-sonnet-4-20250514)
  • Vision API for image and chart analysis
  • 200K token context window

Document Processing

  • PDF parsing via pdf-parse library
  • Excel/CSV processing with xlsx and papaparse
  • HTML extraction with cheerio for URLs
  • Base64 encoding for image analysis

API Integrations

  • Gosset.ai MCP server (SSE transport)
  • ClinicalTrials.gov API v2
  • PubMed E-utilities (NCBI)

Architecture

  • Next.js 14 with App Router
  • TypeScript for type safety
  • Server-side API routes for document processing
  • Client-side React components for interactive UI

Security

  • Session-based authentication
  • Environment variable configuration
  • No document storage (privacy-preserving)
  • All processing happens in real-time

Tags:

Clinical TrialsEfficacy DataSafety Analysis